Montgomery Slatkin

2008 a

M. Slatkin, A Bayesian method for jointly estimating allele age and selection intensity. Genetics Research 90:129-137. pdf

 b

P. L. F. Johnson and M. Slatkin Accounting for bias from sequencing error in population genetic estimates. Molecular Biology and Evolution 25:199-206. pdf

 c

M. Slatkin, Linkage disequilibrium -- understanding the evolutionary past and mapping the medical future. Nature Reviews Genetics 9:477-485. pdf

 d

M. Slatkin, Genotype-specific recurrence risks as indicators of the genetic architecture of complex diseases. American Journal of Human Genetics 83:120-126. pdf

2007 a

S.N. Evans, Y. Shvets and M. Slatkin, Non-equilibrium theory of the allele frequency spectrum. Theoretical Population Biology 71: 109-119. pdf

 b

Y.S. Song and M. Slatkin, A graphical approach to multi-locus match probability computation: revisiting the product rule. Theoretical Population Biology 72: 96-110. pdf

 c

E.C. Anderson and M. Slatkin, Estimation of the number of individuals founding colonized populations. Evolution 61: 927-983. pdf

 d

R. Leblois and M. Slatkin, Estimating the number of founder lineages from haplotypes of closely linked SNPs. Molecular Ecology 16: 2237-2245. pdf

 e

M. Hofreiter, S. Münzel, N. Conard, J. Pollack, M. Slatkin, G. Weiss and S. Pääbo, Sudden replacement of cave bear mitochondrial DNA in the late Pleistocene. Current Biology 19: R122-R123. pdf

 f

N. Rohland, A.S. Malaspinas, J.L. Pollack, M. Slatkin, P. Matheus, et al., Proboscidean mitogenomics: Analysis of chronology and mode of elephant evolution using mastodon as outgroup. PLoS Biol 5(8): e207. doi:10.1371/journal.pbio.0050207 pdf

 g

H. Chen, R.E.Green, S. Pääbo, M. Slatkin, The joint allele-frequency spectrum in closely related species. Genetics 177: 387-398. pdf

 h

W. W. Zhai, M. Slatkin and R. Nielsen, Exploring variation in the d(N)/d(S) ratio among sites and lineages using mutational mappings: Applications to the influenza virus. Journal of Molecular Evolution 65: 340-348. pdf

2006 a

M. Slatkin and J.L. Pollack, The concordance of gene trees and species trees at two linked loci. Genetics 172 1979-1984. pdf

 b

J. Krause, P.H. Dear, J. Pollack, M. Slatkin, H. Spriggs, I. Barnes, A. Lister, S. Pääbo and M. Hofreiter, Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae. Nature 439: 724-727. pdf

2005 a

M. Slatkin, Seeing ghosts: the effect of unsampled populations on migration rates estimated between sampled populations. Molecular Ecology 14: 67-73. pdf

 b

E.T. Wood, D.A. Stover,  M. Slatkin, M.W. Nachman, and M.F. Hammer, The b-globin recombinational hotspot reduces the effects of strong selection around HbC, a recently arisen mutation providing resistance to malaria. American Journal of Human Genetics 77: 637-642. pdf

 c

J. Novembre, A.P. Galvani, M. Slatkin, The geographic spread of the CCR5-Δ32 HIV-resistance allele. Public Library of Science, Biology 3: 1954-1962.pdf

 d

M. A. Saunders, M. Slatkin, C. Garner, M.F. Hammer and M.W. Nachman, The span of linkage disequilibrium caused by selection on G6PD in humans. Genetics 171: 1219-1229. pdf

2004 a

E.C. Anderson and M. Slatkin, Population genetic basis of haplotype blocks in the 5q31 region. American Journal of Human Genetics 74: 40-49. pdf

 b

A.P. Galvani and M. Slatkin, Intense selection in an age-structured population. Proceedings of the Royal Society of London B. 271: 171-176. pdf

 c

M. Slatkin, A population-genetic test of founder effects and implications for Ashkenazi Jewish diseases. American Journal of Human Genetics 75: 282-293. pdf

 d

M.W. Neff, K.R. Robertson, A. Wong, N. Safra, K.W. Broman, M. Slatkin, K.L. Mealey, and N.C. Pedersen, Breed distribution and history of canine mdr1-1Δ, a pharmacogenetic mutation that marks the emergence of breeds from the collie lineage. Proceedings of the National Academy of Science, USA 101: 11725-11730. pdf

2003 a

M. O'Hely and M. Slatkin, The loss of statistical power to distinguish populations when certain samples are ambiguous. Theoretical Population Biology 64: 177-192. pdf

 b

E.C. Anderson and M. Slatkin, Orr's QTL sign test under conditions of trait ascertainment. Genetics 165: 445_446. pdf

 c

M. Slatkin and J. Novembre, Appendix to paper by Wall and Herbeck, Journal of Molecular Evolution 56: 689-690. pdf

 d

A.P. Galvani and M. Slatkin, Evaluating plague and smallpox as historical selective pressures for the CCR5-Δ32 HIV-resistance allele. Proceedings of the National Academy of Sciences, USA 100: 15276-15279. pdf

2002 a

C.P. Garner and M. Slatkin, Likelihood-based disequilibrium mapping for two-marker haplotype data. Theoretical Population Biology 61 153-161. pdf

 b

C.A. Muirhead, N.L. Glass and M. Slatkin, Multilocus self-recognition systems in fungi as a cause of trans-species polymorphism. Genetics 633-641. pdf

 c

M. Slatkin, A vectorized method of importance sampling with applications to models of mutation and migration. Theoretical Population Biology 62: 339-348. pdf

 d

P. Schliekelman and M. Slatkin, Multiplex relative risk and estimation of the number of loci underlying an inherited disease. American Journal of Human Genetics 71:1369-1385. pdf

2001 a

P. Schliekelman, C.P. Garner and M. Slatkin, Natural selection and resistance to HIV. Nature (Scientific Correspondence) 411: 545-546. pdf

 b

M. Slatkin and G. Bertorelle, The use of intra-allelic variability for testing neutrality and estimating population growth rate. Genetics 158: 865-874. pdf

 c

M. Slatkin, Simulating genealogies of selected alleles in a population of variable size. Genetical Research 78: 49-57. pdf

2000 a

T. Wiehe, J. Mountain, P. Parham, and M. Slatkin, Inference of the relative roles of recombination and intragenic gene conversion in the generation of HLA class I diversity. Genetical Research 75: 61-73. pdf

 b

M. Slatkin, Balancing selection at closely linked, overdominant loci in a finite population. Genetics 54: 1367-1378. pdf

 c

R. Nielsen and M. Slatkin, Likelihood analysis of ongoing gene flow and historical association. Evolution 54: 44-50. pdf

 d

M. Slatkin and B. Rannala, Estimating allele age. Annual Reviews of Genomics and Human Genetics 1: 225-249. pdf

 e

M. Slatkin and C.A. Muirhead, A method of estimating the intensity of overdominant selection from the distribution of allele frequencies. Genetics 156: 2119-2126. pdf

 f

M. Slatkin, Allele age and a test for selection on rare alleles. Phil. Trans. Roy. Soc. London B 355: 1663-1668. pdf

1999 a

M. Slatkin, Disequilibrium mapping of a quantitative trait locus in an expanding population. American Journal of Human Genetics 64: 1765-1773. pdf

 b

M. Slatkin and C.A. Muirhead, Overdominant alleles in a population of variable size. Genetics 152: 775-781. pdf

 c

E.G. Williamson and M. Slatkin, Using maximum likelihood to estimate population size from temporal changes in allele frequencies. Genetics 152:755-761. pdf

1998 a

L. Excoffier and M. Slatkin, Incorporating genotypes of relatives into a test of linkage disequilibrium. American Journal of Human Genetics 62: 171-180. pdf

 b

B. Rannala and M. Slatkin, Likelihood analysis of disequilibrium mapping, and related problems. American Journal of Human Genetics 62: 459-473. pdf

 c

R. Nielsen, J.L. Mountain, J.P. Huelsenbeck and M. Slatkin, Maximum-likelihood estimation of population divergence times and populations phylogeny in models without mutation. Evolution 52: 669-677. pdf

 d

M. Slatkin and T. Wiehe, Genetic hitchhiking in a subdivided population. Genetical Research 71:155-160. pdf

 e

B. Rannala and M. Slatkin, Linkage disequilibrium mapping and Parkinson's disease. Science (Technical Comment) 280:175a. pdf